Welcome to pyAMNESIA’s documentation!

pyAMNESIA is a python pipeline for analysing the Activity and Morphology of NEurons using Skeletonization and other Image Analysis techniques.

Getting started

• Installation
• How to use

Overview

• Introduction
  • Motivation
  • Functionalities
• Skeleton
  • Methods
  • Parameter selection
• Clustering
  • Methods
  • Parameter selection
• Factorization
  • Methods
  • Parameter selection
• Results and computation
  • Results
  • Computational performance

Miscellaneous

• Configuration templates
  • Clustering templates
  • Factorization templates
• Robustness
  • Parameter tuning
  • Consecutive clusterings
  • Skip skeletonization
• Support
  • Contributing
  • License
  • Contact